74 lines
2.5 KiB
Markdown
74 lines
2.5 KiB
Markdown
# Marmoset Tracer-Injection [R01_0107]
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Authors: Akiya Watakabe<sup>1</sup>*, Henrik Skibbe<sup>2</sup>
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1. Laboratory for Molecular Analysis of Higher Brain Function, RIKEN Center for Brain Science
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2. Brain Image Analysis Unit, RIKEN Center for Brain Science
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*corresponding authors: Akiya Watakabe (akiya.watakabe@riken.jp)
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## DATASET DESCRIPTION
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This dataset contains **TissueCyte** images produced during **tracer injection** experiment on Marmoset **R01_0107**
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* Microscopy images and annotations: Akiya Watakabe.
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* Image post-processing: Henrik Skibbe.
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For more details see https://dataportal.brainminds.jp/marmoset-tracer-injection
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## EXPERIMENT METADATA
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|----|-----|
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|Brain/MINDS ID|R01_0107|
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|Group|Yamamori|
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|Lab identifier|TT78|
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|Region of injection|A13L|
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|Side of injection|left|
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|Summary|A13L injection. ("OFC"). No leak in the dlPFC, shows typical OFC pattern. Physical damage around the injection site. |
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|Known issues|Physical damage to the tissue around section 112. In particular, the injection site is severed from the medial side. |
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|Age|2.5|
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|Sex|M|
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|Body weight (g)|327|
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|Date of birth|20161006|
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|Injection date|20190329|
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|Survival period (day)|27|
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| Tracer **1** |(thy1-tTA 1/TRE-clover 1/TRE-Vamp2mPFC 0.25)x10e12 vg/ml|
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| Direction|anterograde|
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| Method|0.2ul x 1 (@ 1 mm above the "floor bone") 5min |
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| Tracer **2** |AAV2retro-EF1-cre: 1.5x10e12 vg/ml|
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| Injection Site|Coinjection with tracer 1|
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| Direction|retro|
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| Tracer **3** |10 % BDA|
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| Injection Site|ipsi/A47O|
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| Direction|antero|
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| Method|0.2µl/5min x1|
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| Tracer **4** |TET-smFP-V5(thy1-tTA 1/TRE-smFP-V5 1)x10e12 vg/ml|
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| Injection Site|AP=0, L=3|
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| Direction|antero|
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| Method|0.1 µl/5 min @ 0.7 mm|
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| Tracer **5** |TET-smFP-FLAG (thy1-tTA 1/TRE-smFP-FLAG 1)x10e12 vg/ml|
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| Injection Site|AP=0, R=3|
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| Direction|antero|
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| Method|0.1 µl/5 min @ 0.7 mm|
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| Tracer **6** |TET-smFP-HA (thy1-tTA 1/TRE-smFP-HA 1)x10e12 vg/ml|
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| Injection Site|contra/A25|
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| Direction|antero|
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| Method|0.2 µl/5 min @ 0.7 mm|
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## CONTENT
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| File name | Description |
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| ---- | ---- |
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|[`NN_tracer`](NN_tracer)/||
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|[`c2_50mu`](c2_50mu)/||
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|[`labels`](labels)/||
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|[`c1_50mu`](c1_50mu)/||
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|[`c3_50mu`](c3_50mu)/||
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|[`Backlit_slices`](Backlit_slices)/||
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|[`Nissl_slices`](Nissl_slices)/||
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**Note:** Color lookup table used in [atlas region labels slices](labels) can be found [here](https://cau-gin.brainminds.riken.jp/brainminds/BMA-2017/src/master/bma-1-clut.ctbl).
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