MTI-R01_0078/README.md

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2021-12-27 00:00:00 +09:00
# Marmoset Tracer-Injection [R01_0078]
Authors: Akiya Watakabe<sup>1</sup>*, Henrik Skibbe<sup>2</sup>
1. Laboratory for Molecular Analysis of Higher Brain Function, RIKEN Center for Brain Science
2. Brain Image Analysis Unit, RIKEN Center for Brain Science
*corresponding authors: Akiya Watakabe (akiya.watakabe@riken.jp)
## DATASET DESCRIPTION
This dataset contains **TissueCyte** images produced during **tracer injection** experiment on Marmoset **R01_0078**
* Microscopy images and annotations: Akiya Watakabe.
* Image post-processing: Henrik Skibbe.
For more details see https://dataportal.brainminds.jp/marmoset-tracer-injection
## EXPERIMENT METADATA
|||
|----|-----|
|Brain/MINDS ID|R01_0078|
|Group|Yamamori|
|Lab identifier|TT52|
|Region of injection|A13L|
|Side of injection|left|
|Summary|A13L injection. ("OFC')Some leak in the dorsal areas. |
|Known issues|There exists considerable leak around A8b/A8aD border along the needle track. |
|Age|8.9|
|Sex|F|
|Body weight (g)|354|
|Date of birth|20090131|
|Injection date|20171120|
|Survival period (day)|29|
|&#x00A0;Tracer **1** |(thy1-tTA 1/TRE-clover 1/TRE-Vamp2mPFC 0.25)x10e12 vg/ml|
|&#x00A0;Direction|anterograde|
|&#x00A0;Method|0.2ul x 1 (@ 0.5mm above the "floor bone") 5min |
|&#x00A0;Tracer **2** |10 % BDA|
|&#x00A0;Injection Site|contra/A24|
|&#x00A0;Direction|antero|
|&#x00A0;Method|1ul/10 min|
## CONTENT
| File name | Description |
| ---- | ---- |
|[`NN_tracer`](NN_tracer)/||
|[`c2_50mu`](c2_50mu)/||
|[`labels`](labels)/||
2023-08-17 00:00:00 +09:00
|[`c1_50mu`](c1_50mu)/||
|[`c3_50mu`](c3_50mu)/||
|[`Backlit_slices`](Backlit_slices)/||
|[`Nissl_slices`](Nissl_slices)/||
2023-09-14 00:00:00 +09:00
**Note:** Color lookup table used in [atlas region labels slices](labels) can be found [here](https://cau-gin.brainminds.riken.jp/brainminds/BMA-2017/src/master/bma-1-clut.ctbl).