MTI-R01_0040/README.md

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2021-12-27 00:00:00 +09:00
# Marmoset Tracer-Injection [R01_0040]
Authors: Akiya Watakabe<sup>1</sup>*, Henrik Skibbe<sup>2</sup>
1. Laboratory for Molecular Analysis of Higher Brain Function, RIKEN Center for Brain Science
2. Brain Image Analysis Unit, RIKEN Center for Brain Science
*corresponding authors: Akiya Watakabe (akiya.watakabe@riken.jp)
## DATASET DESCRIPTION
This dataset contains **TissueCyte** images produced during **tracer injection** experiment on Marmoset **R01_0040**
* Microscopy images and annotations: Akiya Watakabe.
* Image post-processing: Henrik Skibbe.
For more details see https://dataportal.brainminds.jp/marmoset-tracer-injection
## EXPERIMENT METADATA
|||
|----|-----|
|Brain/MINDS ID|R01_0040|
|Group|Yamamori|
|Lab identifier|TT28|
|Region of injection|A8aV|
|Side of injection|left|
|Summary|A8aV injection: small injection (appox. 3-400um). Labeling is not bad. |
|Known issues|Smaller than other samples (appox. 3-400um). |
|Age|5.6|
|Sex|M|
|Body weight (g)|378|
|Date of birth|20110105|
|Injection date|20160801|
|Survival period (day)|29|
|&#x00A0;Tracer **1** |(thy1-tTA 1/TRE-clover 1/TRE-Vamp2mPFC 0.25)x10e12 vg/ml|
|&#x00A0;Direction|anterograde|
|&#x00A0;Method|0.1ul x 1 (@ 1mm)/5min|
|&#x00A0;Tracer **2** |5% BDA|
|&#x00A0;Injection Site|contra-parietal|
|&#x00A0;Direction|antero|
|&#x00A0;Method|1ul/10min|
## CONTENT
| File name | Description |
| ---- | ---- |
|[`NN_tracer`](NN_tracer)/||
|[`c2_50mu`](c2_50mu)/||
|[`labels`](labels)/||
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|[`c1_50mu`](c1_50mu)/||
|[`c3_50mu`](c3_50mu)/||
|[`Backlit_slices`](Backlit_slices)/||
|[`Nissl_slices`](Nissl_slices)/||
2023-09-14 00:00:00 +09:00
**Note:** Color lookup table used in [atlas region labels slices](labels) can be found [here](https://cau-gin.brainminds.riken.jp/brainminds/BMA-2017/src/master/bma-1-clut.ctbl).