47 lines
3 KiB
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47 lines
3 KiB
Markdown
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# Brain/MINDS Marmoset MRI developmental age-specific templates
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Authors: Fumiko Seki<sup>1,2,3</sup>, Keigo Hikishima<sup>1,2,4</sup>, Yuji Komaki<sup>1,2</sup>, Junichi Hata<sup>1,2,3</sup>, Akiko Uematsu<sup>1,2,3</sup>, Norio Okahara<sup>2</sup>, Masafumi Yamamoto<sup>2</sup>, Haruka Shinohara<sup>2</sup>, Erika Sasaki<sup>1,2</sup>, Hideyuki Okano<sup>1,3</sup>*
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1. Department of Physiology (Okano Lab), Keio University School of Medicine, Keio University School of Medicine
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2. Central Institute for Experimental Animals
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3. Laboratory for Marmoset Neural Architecture, RIKEN Brain Science Institute
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4. Okinawa Institute of Science and Technology Graduate University
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*corresponding author: Hideyuki Okano (hidokano@a2.keio.jp)
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## DATASET DESCRIPTION
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The dataset includes NifTI files of MRI T1-weighted images data and T2-weighted images at the age of 1 month, 3 months, 6 months, 12 months, 18 months, and 24 months. The templates at the age of 18 and 24 months were registered to the stereotaxic coordinates defined in Paxinos<sup>**1**</sup> and Woodward et al<sup>**2**</sup>. For the template at the age of 1, 3, 6, 12 months, we newly defined the stereotaxic coordinates. For details regarding the procedure, please see [Additional_information_about_the_dataset](./Additional_information_about_the_dataset.pdf)
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* [**1**]: Paxinos G. _The marmoset brain in stereotaxic coordinates_. Academic Press. 2012.
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* [**2**]: Woodward A, Hashikawa T, Maeda M, Kaneko T, Hikishima K, Iriki A, Okano H, Yamaguchi Y. _The Brain/MINDS 3D digital marmoset brain atlas_.
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DOI: https://doi.org/10.24475/bma.2799
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## CITATION
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Seki, Fumiko; Hikishima, Keigo; Komaki, Yuji; Hata, Junichi; Uematsu, Akiko; Okahara, Norio; Yamamoto, Masafumi; Shinohara, Haruka; Sasaki, Erika; Okano, Hideyuki : _Developmental Age-Specific Brain Templates Dataset (DataID: 3405)_ DOI: https://doi.org/10.24475/bminds.mri.kfs.3405
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## RELATED PUBLICATION(S)
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Seki F, Hikishima K, Komaki Y, Hata J, Uematsu A, Okahara N, Yamamoto M, Shinohara H, Sasaki E, Okano H. _Developmental trajectories of macroanatomical structures in common marmoset brain_. Neuroscience, 364(19):143-156, 2017.
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DOI: https://doi.org/10.1016/j.neuroscience.2017.09.021
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Details of materials and methods about the template reconstruction are available there.
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## LICENSE
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This work is licensed under a [Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License](http://creativecommons.org/licenses/by-nc-nd/4.0/).
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## CONTENT
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| File name | Description |
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| ---- | ---- |
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|[`Additional_information_about_the_dataset.pdf`](Additional_information_about_the_dataset.pdf)|The details about the stereotaxic coordinates in developing brain |
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|[`1month/`](1month/)|N=13 (male, 7; female, 6)|
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|[`3months/`](3months/)|N=15 (male, 7; female, 8)|
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|[`6months/`](6months/)|N=16 (male, 9; female, 7)|
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|[`12months/`](12months/)|N=16 (male, 8; female, 8)|
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|[`18months/`](18months/)|N=17 (male, 7 female, 10)|
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|[`24months/`](24months/)|N=13 (male, 5; female, 8)|
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