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Brain/MINDS Marmoset MRI developmental age-specific templates
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README.md

Brain/MINDS Marmoset MRI developmental age-specific templates

Authors: Fumiko Seki1,2,3, Keigo Hikishima1,2,4, Yuji Komaki1,2, Junichi Hata1,2,3, Akiko Uematsu1,2,3, Norio Okahara2, Masafumi Yamamoto2, Haruka Shinohara2, Erika Sasaki1,2, Hideyuki Okano1,3*

  1. Department of Physiology (Okano Lab), Keio University School of Medicine, Keio University School of Medicine
  2. Central Institute for Experimental Animals
  3. Laboratory for Marmoset Neural Architecture, RIKEN Brain Science Institute
  4. Okinawa Institute of Science and Technology Graduate University

*corresponding author: Hideyuki Okano (hidokano@a2.keio.jp)

DATASET DESCRIPTION

The dataset includes NifTI files of MRI T1-weighted images data and T2-weighted images at the age of 1 month, 3 months, 6 months, 12 months, 18 months, and 24 months. The templates at the age of 18 and 24 months were registered to the stereotaxic coordinates defined in Paxinos1 and Woodward et al2. For the template at the age of 1, 3, 6, 12 months, we newly defined the stereotaxic coordinates. For details regarding the procedure, please see Additional_information_about_the_dataset

  • [1]: Paxinos G. The marmoset brain in stereotaxic coordinates. Academic Press. 2012.
  • [2]: Woodward A, Hashikawa T, Maeda M, Kaneko T, Hikishima K, Iriki A, Okano H, Yamaguchi Y. The Brain/MINDS 3D digital marmoset brain atlas. DOI: https://doi.org/10.24475/bma.2799

CITATION

Seki, Fumiko; Hikishima, Keigo; Komaki, Yuji; Hata, Junichi; Uematsu, Akiko; Okahara, Norio; Yamamoto, Masafumi; Shinohara, Haruka; Sasaki, Erika; Okano, Hideyuki : Developmental Age-Specific Brain Templates Dataset (DataID: 3405) DOI: https://doi.org/10.24475/bminds.mri.kfs.3405

RELATED PUBLICATION(S)

Seki F, Hikishima K, Komaki Y, Hata J, Uematsu A, Okahara N, Yamamoto M, Shinohara H, Sasaki E, Okano H. Developmental trajectories of macroanatomical structures in common marmoset brain. Neuroscience, 364(19):143-156, 2017. DOI: https://doi.org/10.1016/j.neuroscience.2017.09.021

Details of materials and methods about the template reconstruction are available there.

LICENSE

This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.

CONTENT

File name Description
Additional_information_about_the_dataset.pdf The details about the stereotaxic coordinates in developing brain
1month/ N=13 (male, 7; female, 6)
3months/ N=15 (male, 7; female, 8)
6months/ N=16 (male, 9; female, 7)
12months/ N=16 (male, 8; female, 8)
18months/ N=17 (male, 7 female, 10)
24months/ N=13 (male, 5; female, 8)