brainminds/MTI-R04_0079
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions
Marmoset Tracer Injection – Image set [MTI-R04_0079]
5 commits 2 branches 0 tags 178 GiB
Find a file
Exact
brainminds 565e305171 add link to region lookup table
2023-09-14 00:00:00 +09:00
.datalad [DATALAD] new dataset 2021-12-27 00:00:00 +09:00
Backlit_slices add c1, c3, backlit & nissl slices 2023-08-17 00:00:00 +09:00
c1_50mu add c1, c3, backlit & nissl slices 2023-08-17 00:00:00 +09:00
c2_50mu initial release 2021-12-27 00:00:00 +09:00
c3_50mu add c1, c3, backlit & nissl slices 2023-08-17 00:00:00 +09:00
labels/ROIS_ID initial release 2021-12-27 00:00:00 +09:00
Nissl_slices add c1, c3, backlit & nissl slices 2023-08-17 00:00:00 +09:00
NN_tracer initial release 2021-12-27 00:00:00 +09:00
.gitattributes initial release 2021-12-27 00:00:00 +09:00
LICENSE update license 2023-05-09 00:00:00 +09:00
README.md add link to region lookup table 2023-09-14 00:00:00 +09:00

README.md

Marmoset Tracer-Injection [R04_0079]

Authors: Akiya Watakabe1*, Henrik Skibbe2

  1. Laboratory for Molecular Analysis of Higher Brain Function, RIKEN Center for Brain Science
  2. Brain Image Analysis Unit, RIKEN Center for Brain Science

*corresponding authors: Akiya Watakabe (akiya.watakabe@riken.jp)

DATASET DESCRIPTION

This dataset contains TissueCyte images produced during tracer injection experiment on Marmoset R04_0079

  • Microscopy images and annotations: Akiya Watakabe.
  • Image post-processing: Henrik Skibbe.

For more details see https://dataportal.brainminds.jp/marmoset-tracer-injection

EXPERIMENT METADATA
Brain/MINDS ID R04_0079
Group Yamamori
Lab identifier TT57
Region of injection A6M
Side of injection left
Summary A6M injectin ("PM"). A8b transduction.
Age 4.3
Sex F
Body weight (g) 310
Date of birth 20131219
Injection date 20180309
Survival period (day) 27
 Tracer 1 (thy1-tTA 1/TRE-clover 1/TRE-Vamp2mPFC 0.25)x10e12 vg/ml
 Direction anterograde
 Method 0.1ul x 2 (@ 0.8 and 1.2mm) 5min each
 Tracer 2 AAV2retro-EF1-cre: 0.8x10e12 vg/ml
 Injection Site Coinjection with tracer 1
 Direction retro
 Tracer 3 10 % BDA
 Injection Site ipsi/ A23
 Direction antero
 Method 0.5µl/5min x2

CONTENT

File name Description
NN_tracer/
c2_50mu/
labels/
c1_50mu/
c3_50mu/
Backlit_slices/
Nissl_slices/

Note: Color lookup table used in atlas region labels slices can be found here.