initial release

README.md

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+# Marmoset Tracer-Injection [R01_0063]
+
+Authors: Akiya Watakabe<sup>1</sup>*, Henrik Skibbe<sup>2</sup>
+
+1. Laboratory for Molecular Analysis of Higher Brain Function, RIKEN Center for Brain Science
+2. Brain Image Analysis Unit, RIKEN Center for Brain Science
+
+*corresponding authors: Akiya Watakabe (akiya.watakabe@riken.jp)
+
+
+## DATASET DESCRIPTION
+    
+This dataset contains **TissueCyte** images produced during **tracer injection** experiment on Marmoset **R01_0063**
+
+* Microscopy images and annotations: Akiya Watakabe.
+* Image post-processing: Henrik Skibbe.
+
+
+For more details see https://dataportal.brainminds.jp/marmoset-tracer-injection
+
+
+## EXPERIMENT METADATA
+|||
+|----|-----|
+|Brain/MINDS ID|R01_0063|
+|Lab identifier|TT42|
+|Region of injection|A8aV|
+|Summary|A8aV injection.  A problem in stage position around section 459.  |
+|Known issues|Sample came off the stage after section 459.  Due to position shift on comeback, there occured abrupt position shift at section 460 and misregistration in the nearby sections (440-459).  |
+|Age|8.3|
+|Sex|M|
+|Date of birth|20090203|
+|Injection date|20170517|
+|Survival period (day)|28|
+|&#x00A0;Tracer **1** |(thy1-tTA 1/TRE-clover 1/TRE-Vamp2mPFC 0.25)x10e12 vg/ml|
+|&#x00A0;Direction|anterograde|
+|&#x00A0;Method|0.1ul x 2 (@ 0.8 and 1.2mm) 5min each|
+|&#x00A0;Tracer **2** |10 % BDA|
+|&#x00A0;Injection Site|contra/parietal|
+|&#x00A0;Direction|antero|
+|&#x00A0;Method|0.5ul/5minx2|
+
+## TERMS OF USE
+
+see https://dataportal.brainminds.jp/marmoset-tracer-injection/terms-of-use
+
+## CONTENT
+
+| File name | Description |
+| ---- | ---- |
+|[`NN_tracer`](NN_tracer)/||
+|[`c2_50mu`](c2_50mu)/||
+|[`labels`](labels)/||