initial release

README.md

@@ -0,0 +1,56 @@
+# Marmoset Tracer-Injection [R01_0046]
+
+Authors: Akiya Watakabe<sup>1</sup>*, Henrik Skibbe<sup>2</sup>
+
+1. Laboratory for Molecular Analysis of Higher Brain Function, RIKEN Center for Brain Science
+2. Brain Image Analysis Unit, RIKEN Center for Brain Science
+
+*corresponding authors: Akiya Watakabe (akiya.watakabe@riken.jp)
+
+
+## DATASET DESCRIPTION
+    
+This dataset contains **TissueCyte** images produced during **tracer injection** experiment on Marmoset **R01_0046**
+
+* Microscopy images and annotations: Akiya Watakabe.
+* Image post-processing: Henrik Skibbe.
+
+
+For more details see https://dataportal.brainminds.jp/marmoset-tracer-injection
+
+
+## EXPERIMENT METADATA
+|||
+|----|-----|
+|Brain/MINDS ID|R01_0046|
+|Group|Yamamori|
+|Lab identifier|TT30|
+|Region of injection|A8aD|
+|Side of injection|left|
+|Summary|A8aD injection.  (8aD-C) |
+|Known issues|No image for section 369.  Midbrain images are not very good around this section.  |
+|Age|3.4|
+|Sex|M|
+|Body weight (g)|423.7|
+|Date of birth|20130612|
+|Injection date|20161027|
+|Survival period (day)|29|
+|&#x00A0;Tracer **1** |(thy1-tTA 1/TRE-clover 1/TRE-Vamp2mPFC 0.25)x10e12 vg/ml|
+|&#x00A0;Direction|anterograde|
+|&#x00A0;Method|0.1ul x 2 (@ 0.8 and 1.2mm) 5min each|
+|&#x00A0;Tracer **2** |10 % BDA|
+|&#x00A0;Injection Site|contra-MT|
+|&#x00A0;Direction|antero|
+|&#x00A0;Method|1ul/10min|
+
+## TERMS OF USE
+
+see https://dataportal.brainminds.jp/marmoset-tracer-injection/terms-of-use
+
+## CONTENT
+
+| File name | Description |
+| ---- | ---- |
+|[`NN_tracer`](NN_tracer)/||
+|[`c2_50mu`](c2_50mu)/||
+|[`labels`](labels)/||