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For -the avoidance of doubt, this paragraph does not form part of the -public licenses. - -Creative Commons may be contacted at creativecommons.org. - diff --git a/README.md b/README.md deleted file mode 100644 index 2f5d7b2..0000000 --- a/README.md +++ /dev/null @@ -1,46 +0,0 @@ -# Brain/MINDS Marmoset MRI developmental age-specific templates - -Authors: Fumiko Seki1,2,3, Keigo Hikishima1,2,4, Yuji Komaki1,2, Junichi Hata1,2,3, Akiko Uematsu1,2,3, Norio Okahara2, Masafumi Yamamoto2, Haruka Shinohara2, Erika Sasaki1,2, Hideyuki Okano1,3* - -1. Department of Physiology (Okano Lab), Keio University School of Medicine, Keio University School of Medicine -2. Central Institute for Experimental Animals -3. Laboratory for Marmoset Neural Architecture, RIKEN Brain Science Institute -4. Okinawa Institute of Science and Technology Graduate University - -*corresponding author: Hideyuki Okano (hidokano@a2.keio.jp) - -## DATASET DESCRIPTION - -The dataset includes NifTI files of MRI T1-weighted images data and T2-weighted images at the age of 1 month, 3 months, 6 months, 12 months, 18 months, and 24 months. The templates at the age of 18 and 24 months were registered to the stereotaxic coordinates defined in Paxinos**1** and Woodward et al**2**. For the template at the age of 1, 3, 6, 12 months, we newly defined the stereotaxic coordinates. For details regarding the procedure, please see [Additional_information_about_the_dataset](./Additional_information_about_the_dataset.pdf) - -* [**1**]: Paxinos G. _The marmoset brain in stereotaxic coordinates_. Academic Press. 2012. -* [**2**]: Woodward A, Hashikawa T, Maeda M, Kaneko T, Hikishima K, Iriki A, Okano H, Yamaguchi Y. _The Brain/MINDS 3D digital marmoset brain atlas_. -DOI: https://doi.org/10.24475/bma.2799 - -## CITATION - -Seki, Fumiko; Hikishima, Keigo; Komaki, Yuji; Hata, Junichi; Uematsu, Akiko; Okahara, Norio; Yamamoto, Masafumi; Shinohara, Haruka; Sasaki, Erika; Okano, Hideyuki : _Developmental Age-Specific Brain Templates Dataset (DataID: 3405)_ DOI: https://doi.org/10.24475/bminds.mri.kfs.3405 - -## RELATED PUBLICATION(S) - -Seki F, Hikishima K, Komaki Y, Hata J, Uematsu A, Okahara N, Yamamoto M, Shinohara H, Sasaki E, Okano H. _Developmental trajectories of macroanatomical structures in common marmoset brain_. Neuroscience, 364(19):143-156, 2017. -DOI: https://doi.org/10.1016/j.neuroscience.2017.09.021 - -Details of materials and methods about the template reconstruction are available there. - -## LICENSE - -This work is licensed under a [Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License](http://creativecommons.org/licenses/by-nc-nd/4.0/). - -## CONTENT - -| File name | Description | -| ---- | ---- | -|[`Additional_information_about_the_dataset.pdf`](Additional_information_about_the_dataset.pdf)|The details about the stereotaxic coordinates in developing brain | -|[`1month/`](1month/)|N=13 (male, 7; female, 6)| -|[`3months/`](3months/)|N=15 (male, 7; female, 8)| -|[`6months/`](6months/)|N=16 (male, 9; female, 7)| -|[`12months/`](12months/)|N=16 (male, 8; female, 8)| -|[`18months/`](18months/)|N=17 (male, 7 female, 10)| -|[`24months/`](24months/)|N=13 (male, 5; female, 8)| - diff --git a/a87/64e/MD5E-s2232027--b7759ef174befbba60abeb04edb000c0.nii.gz.log b/a87/64e/MD5E-s2232027--b7759ef174befbba60abeb04edb000c0.nii.gz.log new file mode 100644 index 0000000..6b21e80 --- /dev/null +++ b/a87/64e/MD5E-s2232027--b7759ef174befbba60abeb04edb000c0.nii.gz.log @@ -0,0 +1,3 @@ +1668737644.235433318s 1 d8b0d9f8-cf89-45de-a571-5c61d6cbd5be +1668737654.196026799s 1 0c336b96-8a93-49cd-a14b-afdcd4b7ff73 +1668737654.202839643s 1 0c336b96-8a93-49cd-a14b-afdcd4b7ff73 diff --git a/b0b/f4f/MD5E-s4151372--beaee77954a5eabf328d10cfdec39c5f.nii.gz.log b/b0b/f4f/MD5E-s4151372--beaee77954a5eabf328d10cfdec39c5f.nii.gz.log new file mode 100644 index 0000000..a48663f --- /dev/null +++ b/b0b/f4f/MD5E-s4151372--beaee77954a5eabf328d10cfdec39c5f.nii.gz.log @@ -0,0 +1,3 @@ +1668737644.191159988s 1 d8b0d9f8-cf89-45de-a571-5c61d6cbd5be +1668737653.665955094s 1 0c336b96-8a93-49cd-a14b-afdcd4b7ff73 +1668737653.673773035s 1 0c336b96-8a93-49cd-a14b-afdcd4b7ff73 diff --git a/bb7/c21/MD5E-s1785066--15702de51dc1b1e95f287ddd9a55abb9.nii.gz.log b/bb7/c21/MD5E-s1785066--15702de51dc1b1e95f287ddd9a55abb9.nii.gz.log new file mode 100644 index 0000000..7dee8ee --- /dev/null +++ b/bb7/c21/MD5E-s1785066--15702de51dc1b1e95f287ddd9a55abb9.nii.gz.log @@ -0,0 +1,3 @@ +1668737644.044225492s 1 d8b0d9f8-cf89-45de-a571-5c61d6cbd5be +1668737652.012185658s 1 0c336b96-8a93-49cd-a14b-afdcd4b7ff73 +1668737652.019644168s 1 0c336b96-8a93-49cd-a14b-afdcd4b7ff73 diff --git a/cc7/291/MD5E-s14491787--8c42cd829c9d663a2aa3937e4cd2271f.nii.gz.log b/cc7/291/MD5E-s14491787--8c42cd829c9d663a2aa3937e4cd2271f.nii.gz.log new file mode 100644 index 0000000..5572178 --- /dev/null +++ b/cc7/291/MD5E-s14491787--8c42cd829c9d663a2aa3937e4cd2271f.nii.gz.log @@ -0,0 +1,3 @@ +1668737643.990557231s 1 d8b0d9f8-cf89-45de-a571-5c61d6cbd5be +1668737651.174081619s 1 0c336b96-8a93-49cd-a14b-afdcd4b7ff73 +1668737651.181467196s 1 0c336b96-8a93-49cd-a14b-afdcd4b7ff73 diff --git a/d67/79f/MD5E-s14293886--c5bf25965080c14b56e9bd0f92c5fca2.nii.gz.log b/d67/79f/MD5E-s14293886--c5bf25965080c14b56e9bd0f92c5fca2.nii.gz.log new file mode 100644 index 0000000..06dd1da --- /dev/null +++ b/d67/79f/MD5E-s14293886--c5bf25965080c14b56e9bd0f92c5fca2.nii.gz.log @@ -0,0 +1,3 @@ +1668737643.89123777s 1 d8b0d9f8-cf89-45de-a571-5c61d6cbd5be +1668737650.025134582s 1 0c336b96-8a93-49cd-a14b-afdcd4b7ff73 +1668737650.032822742s 1 0c336b96-8a93-49cd-a14b-afdcd4b7ff73 diff --git a/d80/c4d/MD5E-s14184874--f24fc7c84ce71febb6673d53479d11b2.nii.gz.log b/d80/c4d/MD5E-s14184874--f24fc7c84ce71febb6673d53479d11b2.nii.gz.log new file mode 100644 index 0000000..20ee960 --- /dev/null +++ b/d80/c4d/MD5E-s14184874--f24fc7c84ce71febb6673d53479d11b2.nii.gz.log @@ -0,0 +1,3 @@ +1668737643.841211409s 1 d8b0d9f8-cf89-45de-a571-5c61d6cbd5be +1668737649.413753116s 1 0c336b96-8a93-49cd-a14b-afdcd4b7ff73 +1668737649.421228235s 1 0c336b96-8a93-49cd-a14b-afdcd4b7ff73 diff --git a/uuid.log b/uuid.log new file mode 100644 index 0000000..fd12d91 --- /dev/null +++ b/uuid.log @@ -0,0 +1,2 @@ +0c336b96-8a93-49cd-a14b-afdcd4b7ff73 git@54ee15281d69:/data/repos/brainminds/mri-developmentaltemplates.git timestamp=1668737647.395383659s +d8b0d9f8-cf89-45de-a571-5c61d6cbd5be fred@ssb.bminds.brain.riken.jp:~/DataLad/datasets/MRI-DevelopmentalTemplates timestamp=1668737636.53850761s