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/dev/null +++ b/LICENSE @@ -0,0 +1,403 @@ +Attribution-NonCommercial-NoDerivatives 4.0 International + +======================================================================= + +Creative Commons Corporation ("Creative Commons") is not a law firm and +does not provide legal services or legal advice. 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Except for the limited purpose of indicating that +material is shared under a Creative Commons public license or as +otherwise permitted by the Creative Commons policies published at +creativecommons.org/policies, Creative Commons does not authorize the +use of the trademark "Creative Commons" or any other trademark or logo +of Creative Commons without its prior written consent including, +without limitation, in connection with any unauthorized modifications +to any of its public licenses or any other arrangements, +understandings, or agreements concerning use of licensed material. For +the avoidance of doubt, this paragraph does not form part of the +public licenses. + +Creative Commons may be contacted at creativecommons.org. + diff --git a/README.md b/README.md new file mode 100644 index 0000000..2f5d7b2 --- /dev/null +++ b/README.md @@ -0,0 +1,46 @@ +# Brain/MINDS Marmoset MRI developmental age-specific templates + +Authors: Fumiko Seki1,2,3, Keigo Hikishima1,2,4, Yuji Komaki1,2, Junichi Hata1,2,3, Akiko Uematsu1,2,3, Norio Okahara2, Masafumi Yamamoto2, Haruka Shinohara2, Erika Sasaki1,2, Hideyuki Okano1,3* + +1. Department of Physiology (Okano Lab), Keio University School of Medicine, Keio University School of Medicine +2. Central Institute for Experimental Animals +3. Laboratory for Marmoset Neural Architecture, RIKEN Brain Science Institute +4. Okinawa Institute of Science and Technology Graduate University + +*corresponding author: Hideyuki Okano (hidokano@a2.keio.jp) + +## DATASET DESCRIPTION + +The dataset includes NifTI files of MRI T1-weighted images data and T2-weighted images at the age of 1 month, 3 months, 6 months, 12 months, 18 months, and 24 months. The templates at the age of 18 and 24 months were registered to the stereotaxic coordinates defined in Paxinos**1** and Woodward et al**2**. For the template at the age of 1, 3, 6, 12 months, we newly defined the stereotaxic coordinates. For details regarding the procedure, please see [Additional_information_about_the_dataset](./Additional_information_about_the_dataset.pdf) + +* [**1**]: Paxinos G. _The marmoset brain in stereotaxic coordinates_. Academic Press. 2012. +* [**2**]: Woodward A, Hashikawa T, Maeda M, Kaneko T, Hikishima K, Iriki A, Okano H, Yamaguchi Y. _The Brain/MINDS 3D digital marmoset brain atlas_. +DOI: https://doi.org/10.24475/bma.2799 + +## CITATION + +Seki, Fumiko; Hikishima, Keigo; Komaki, Yuji; Hata, Junichi; Uematsu, Akiko; Okahara, Norio; Yamamoto, Masafumi; Shinohara, Haruka; Sasaki, Erika; Okano, Hideyuki : _Developmental Age-Specific Brain Templates Dataset (DataID: 3405)_ DOI: https://doi.org/10.24475/bminds.mri.kfs.3405 + +## RELATED PUBLICATION(S) + +Seki F, Hikishima K, Komaki Y, Hata J, Uematsu A, Okahara N, Yamamoto M, Shinohara H, Sasaki E, Okano H. _Developmental trajectories of macroanatomical structures in common marmoset brain_. Neuroscience, 364(19):143-156, 2017. +DOI: https://doi.org/10.1016/j.neuroscience.2017.09.021 + +Details of materials and methods about the template reconstruction are available there. + +## LICENSE + +This work is licensed under a [Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License](http://creativecommons.org/licenses/by-nc-nd/4.0/). + +## CONTENT + +| File name | Description | +| ---- | ---- | +|[`Additional_information_about_the_dataset.pdf`](Additional_information_about_the_dataset.pdf)|The details about the stereotaxic coordinates in developing brain | +|[`1month/`](1month/)|N=13 (male, 7; female, 6)| +|[`3months/`](3months/)|N=15 (male, 7; female, 8)| +|[`6months/`](6months/)|N=16 (male, 9; female, 7)| +|[`12months/`](12months/)|N=16 (male, 8; female, 8)| +|[`18months/`](18months/)|N=17 (male, 7 female, 10)| +|[`24months/`](24months/)|N=13 (male, 5; female, 8)| +