From 4cd408c325e91add836d0501852659e4a758bbcd Mon Sep 17 00:00:00 2001 From: brainminds Date: Thu, 14 Jan 2021 00:00:00 +0900 Subject: [PATCH 1/8] branch created From 7e25d0af69eb5d8578731623a34c63570134739d Mon Sep 17 00:00:00 2001 From: brainminds Date: Thu, 14 Jan 2021 00:00:00 +0900 Subject: [PATCH 2/8] update --- uuid.log | 1 + 1 file changed, 1 insertion(+) create mode 100644 uuid.log diff --git a/uuid.log b/uuid.log new file mode 100644 index 0000000..7ef7a1b --- /dev/null +++ b/uuid.log @@ -0,0 +1 @@ +091e5656-d888-4088-8035-cfaf1df7001b fred@ssb.bminds.brain.riken.jp:~/DataLad/datasets/ECoG-Auditory01 timestamp=1668737690.85936267s From 3a1ad80814a818107793ad9c9263d476a990725e Mon Sep 17 00:00:00 2001 From: brainminds Date: Thu, 14 Jan 2021 00:00:00 +0900 Subject: [PATCH 3/8] [DATALAD] new dataset --- .datalad/.gitattributes | 3 +++ .datalad/config | 2 ++ .gitattributes | 2 ++ 3 files changed, 7 insertions(+) create mode 100644 .datalad/.gitattributes create mode 100644 .datalad/config create mode 100644 .gitattributes diff --git a/.datalad/.gitattributes b/.datalad/.gitattributes new file mode 100644 index 0000000..59157cb --- /dev/null +++ b/.datalad/.gitattributes @@ -0,0 +1,3 @@ +config annex.largefiles=nothing +metadata/aggregate* annex.largefiles=nothing +metadata/objects/** annex.largefiles=(anything) diff --git a/.datalad/config b/.datalad/config new file mode 100644 index 0000000..3974e31 --- /dev/null +++ b/.datalad/config @@ -0,0 +1,2 @@ +[datalad "dataset"] + id = fc034a00-12eb-4f5f-99a7-45c92dc2bb62 diff --git a/.gitattributes b/.gitattributes new file mode 100644 index 0000000..af926ef --- /dev/null +++ b/.gitattributes @@ -0,0 +1,2 @@ +* annex.backend=MD5E +**/.git* annex.largefiles=nothing From 7a806f128314fd9e8860799c7adcfafc9d01a86d Mon Sep 17 00:00:00 2001 From: brainminds Date: Thu, 14 Jan 2021 00:00:00 +0900 Subject: [PATCH 4/8] update --- 05d/087/MD5E-s77811945--6f5baa63c903efb21cc0809d7148f2a1.zip.log | 1 + 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If the provision + cannot be reformed, it shall be severed from this Public License + without affecting the enforceability of the remaining terms and + conditions. + + c. No term or condition of this Public License will be waived and no + failure to comply consented to unless expressly agreed to by the + Licensor. + + d. Nothing in this Public License constitutes or may be interpreted + as a limitation upon, or waiver of, any privileges and immunities + that apply to the Licensor or You, including from the legal + processes of any jurisdiction or authority. + + +======================================================================= + +Creative Commons is not a party to its public +licenses. Notwithstanding, Creative Commons may elect to apply one of +its public licenses to material it publishes and in those instances +will be considered the “Licensor.” The text of the Creative Commons +public licenses is dedicated to the public domain under the CC0 Public +Domain Dedication. Except for the limited purpose of indicating that +material is shared under a Creative Commons public license or as +otherwise permitted by the Creative Commons policies published at +creativecommons.org/policies, Creative Commons does not authorize the +use of the trademark "Creative Commons" or any other trademark or logo +of Creative Commons without its prior written consent including, +without limitation, in connection with any unauthorized modifications +to any of its public licenses or any other arrangements, +understandings, or agreements concerning use of licensed material. For +the avoidance of doubt, this paragraph does not form part of the +public licenses. + +Creative Commons may be contacted at creativecommons.org. + diff --git a/Or20171207S16c.zip b/Or20171207S16c.zip new file mode 120000 index 0000000..10d77de --- /dev/null +++ b/Or20171207S16c.zip @@ -0,0 +1 @@ +.git/annex/objects/P4/vg/MD5E-s74174899--0c7d418a76a1eb1f6c08f9460112d56f.zip/MD5E-s74174899--0c7d418a76a1eb1f6c08f9460112d56f.zip \ No newline at end of file diff --git a/Or20171207S2c.zip b/Or20171207S2c.zip new file mode 120000 index 0000000..e762190 --- /dev/null +++ b/Or20171207S2c.zip @@ -0,0 +1 @@ +.git/annex/objects/05/1G/MD5E-s77811945--6f5baa63c903efb21cc0809d7148f2a1.zip/MD5E-s77811945--6f5baa63c903efb21cc0809d7148f2a1.zip \ No newline at end of file diff --git a/Or20171207S4c.zip b/Or20171207S4c.zip new file mode 120000 index 0000000..6dc20d7 --- /dev/null +++ b/Or20171207S4c.zip @@ -0,0 +1 @@ +.git/annex/objects/x5/M7/MD5E-s70787488--9c434af7c6d92a057a9460435e14e47c.zip/MD5E-s70787488--9c434af7c6d92a057a9460435e14e47c.zip \ No newline at end of file diff --git a/Or20171207S6c.zip b/Or20171207S6c.zip new file mode 120000 index 0000000..e883ece --- /dev/null +++ b/Or20171207S6c.zip @@ -0,0 +1 @@ +.git/annex/objects/Gg/28/MD5E-s73385867--3f250fc18d7da57706f4cc450b90af0d.zip/MD5E-s73385867--3f250fc18d7da57706f4cc450b90af0d.zip \ No newline at end of file diff --git a/Or20171221S16c.zip b/Or20171221S16c.zip new file mode 120000 index 0000000..dae7458 --- /dev/null +++ b/Or20171221S16c.zip @@ -0,0 +1 @@ +.git/annex/objects/GJ/5Z/MD5E-s73929702--978baa24eceeceddf3a29c6ac07cd960.zip/MD5E-s73929702--978baa24eceeceddf3a29c6ac07cd960.zip \ No newline at end of file diff --git a/Or20171221S2c.zip b/Or20171221S2c.zip new file mode 120000 index 0000000..7dc1e3e --- /dev/null +++ b/Or20171221S2c.zip @@ -0,0 +1 @@ +.git/annex/objects/58/JM/MD5E-s77787293--8aeb9006ee6e873ef20bd9c5a4df3d37.zip/MD5E-s77787293--8aeb9006ee6e873ef20bd9c5a4df3d37.zip \ No newline at end of file diff --git a/Or20171221S4c.zip b/Or20171221S4c.zip new file mode 120000 index 0000000..92062e5 --- /dev/null +++ b/Or20171221S4c.zip @@ -0,0 +1 @@ +.git/annex/objects/6z/FP/MD5E-s71580262--e28d76d6436d0caddab8de2bd79512b0.zip/MD5E-s71580262--e28d76d6436d0caddab8de2bd79512b0.zip \ No newline at end of file diff --git a/Or20171221S6c.zip b/Or20171221S6c.zip new file mode 120000 index 0000000..4632446 --- /dev/null +++ b/Or20171221S6c.zip @@ -0,0 +1 @@ +.git/annex/objects/7k/4P/MD5E-s73430743--e2de290848e06179d1cf076ece9a63e0.zip/MD5E-s73430743--e2de290848e06179d1cf076ece9a63e0.zip \ No newline at end of file diff --git a/Or20180602S1c.zip b/Or20180602S1c.zip new file mode 120000 index 0000000..9a0cc93 --- /dev/null +++ b/Or20180602S1c.zip @@ -0,0 +1 @@ +.git/annex/objects/Z3/3Z/MD5E-s75790484--630d595d0da1cd6fedf3078c79676df0.zip/MD5E-s75790484--630d595d0da1cd6fedf3078c79676df0.zip \ No newline at end of file diff --git a/Or20180623S1c.zip b/Or20180623S1c.zip new file mode 120000 index 0000000..52db5eb --- /dev/null +++ b/Or20180623S1c.zip @@ -0,0 +1 @@ +.git/annex/objects/V5/zw/MD5E-s73789750--bf6066ac333d61966899dcb3c922d992.zip/MD5E-s73789750--bf6066ac333d61966899dcb3c922d992.zip \ No newline at end of file diff --git a/README.md b/README.md new file mode 100644 index 0000000..7178b65 --- /dev/null +++ b/README.md @@ -0,0 +1,80 @@ +# Marmoset Electrocorticography – Auditory Dataset + +Authors: Misako Komatsu1,2*, Noritaka Ichinohe1,2 + +1. Laboratory for Molecular Analysis of Higher Brain Function, RIKEN Center for Brain Science +2. Department of Ultrastructural Research, National Center of Neurology and Psychiatry + +*corresponding author: Misako Komatsu (mskkomatsu@gmail.com) + +## DATASET DESCRIPTION + +We used auditory stimuli of different durations (AD) and frequencies (AF). In AD, 10 types of pure sinusoidal tones (1 ms rise/fall) with different durations (10, 25, 50, 75, 100, 125, 150, 175, 200, and 225 ms; 1000 Hz; 2000 stimuli in total) were randomly presented with an equal probability of 10%. In AF, 10 types of tones with different frequencies (700, 800, 900, 1000, 1100, 1200, 1300, 1400, 1500, and 1600 Hz; 50 ms; 1000 stimuli in total) were presented with an equal probability of 10%. +Epidural ECoG recordings were taken in the passive listening condition while monkeys were in awake and ketamine (30 mg/kg i.m.) administrated conditions. ECoG data were sampled at 1KHz. +Data format information can be found on [TychoWiki](http://wiki.neurotycho.org/Auditory_Oddball_Details). + +## CITATION + +Komatsu, Misako; Ichinohe, Noritaka : _Brain/MINDS Marmoset Brain ECoG Auditory Dataset 01 (DataID: 4924)_ + +## RELATED PUBLICATION(S) + +Komatsu, M; Ichinohe N (2020): Effects of ketamine administration on auditory information processing in the neocortex of nonhuman primates. Front. Psychiatry 11:826. doi: 10.3389/fpsyt.2020.00826 + +## LICENSE + +This work is licensed under a [Creative Commons Attribution 4.0 International License](http://creativecommons.org/licenses/by/4.0/). + +## CONTENT + +*K10, K30, and K150 mean 10, 30, and 150 mins after ketamine administrations. + +|Data Name|Data Type|Marmoset ID|Condition| +| ---- | ---- |---- |---- | +|[`Ji20180308S1c.zip`](Ji20180308S1c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AD-Awake| +|[`Ji20180308S3c.zip`](Ji20180308S3c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AD-K10| +|[`Ji20180308S5c.zip`](Ji20180308S5c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AD-K30| +|[`Ji20180308S15c.zip`](Ji20180308S15c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AD-K150| +|[`Ji20180313S3c.zip`](Ji20180313S3c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AF-K10| +|[`Ji20180313S5c.zip`](Ji20180313S5c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AF-K30| +|[`Ji20180313S15c.zip`](Ji20180313S15c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AF-K150| +|[`Ji20180317S1c.zip`](Ji20180317S1c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AD-Awake| +|[`Ji20180317S3c.zip`](Ji20180317S3c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AD-K10| +|[`Ji20180317S5c.zip`](Ji20180317S5c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AD-K30| +|[`Ji20180317S15c.zip`](Ji20180317S15c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AD-K150| +|[`Ji20180324S1c.zip`](Ji20180324S1c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AF-Awake| +|[`Ji20180324S3c.zip`](Ji20180324S3c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AF-K10| +|[`Ji20180324S5c.zip`](Ji20180324S5c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AF-K30| +|[`Ji20180324S15c.zip`](Ji20180324S15c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AF-K150| +|[`Ji20180331S1c.zip`](Ji20180331S1c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AF-Awake| +|[`Ji20180414S1c.zip`](Ji20180414S1c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AD-Awake| +|[`Ji20180428S1c.zip`](Ji20180428S1c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AF-Awake| +|[`Ji20180512S1c.zip`](Ji20180512S1c.zip)|MAT(ECoG96, Event)|R03_0024_CM622M|AD-Awake| +|[`Or20171207S2c.zip`](Or20171207S2c.zip)|MAT(ECoG96, Event)|R03_0035_CM814F|AD-Awake| +|[`Or20171207S4c.zip`](Or20171207S4c.zip)|MAT(ECoG96, Event)|R03_0035_CM814F|AD-K10| +|[`Or20171207S6c.zip`](Or20171207S6c.zip)|MAT(ECoG96, Event)|R03_0035_CM814F|AD-K30| +|[`Or20171207S16c.zip`](Or20171207S16c.zip)|MAT(ECoG96, Event)|R03_0035_CM814F|AD-K150| +|[`Or20171221S2c.zip`](Or20171221S2c.zip)|MAT(ECoG96, Event)|R03_0035_CM814F|AF-Awake| +|[`Or20171221S4c.zip`](Or20171221S4c.zip)|MAT(ECoG96, Event)|R03_0035_CM814F|AF-K10| +|[`Or20171221S6c.zip`](Or20171221S6c.zip)|MAT(ECoG96, Event)|R03_0035_CM814F|AF-K30| +|[`Or20171221S16c.zip`](Or20171221S16c.zip)|MAT(ECoG96, Event)|R03_0035_CM814F|AF-K150| +|[`Or20180602S1c.zip`](Or20180602S1c.zip)|MAT(ECoG96, Event)|R03_0035_CM814F|AD-Awake| +|[`Or20180623S1c.zip`](Or20180623S1c.zip)|MAT(ECoG96, Event)|R03_0035_CM814F|AF-Awake| +|[`Rc20180611S5c.zip`](Rc20180611S5c.zip)|MAT(ECoG93, Event)|R03_0044_CM997M|AF-Awake| +|[`Rc20180613S5c.zip`](Rc20180613S5c.zip)|MAT(ECoG93, Event)|R03_0044_CM997M|AF-Awake| +|[`Rc20180618S6c.zip`](Rc20180618S6c.zip)|MAT(ECoG93, Event)|R03_0044_CM997M|AF-Awake| +|[`Rc20180620S6c.zip`](Rc20180620S6c.zip)|MAT(ECoG93, Event)|R03_0044_CM997M|AF-Awake| +|[`Rc20180629S10c.zip`](Rc20180629S10c.zip)|MAT(ECoG93, Event)|R03_0044_CM997M|AD-Awake| +|[`Rc20180702S13c.zip`](Rc20180702S13c.zip)|MAT(ECoG93, Event)|R03_0044_CM997M|AD-Awake| +|[`Rc20180718S6c.zip`](Rc20180718S6c.zip)|MAT(ECoG93, Event)|R03_0044_CM997M|AD-Awake| +|[`Rc20180720S11c.zip`](Rc20180720S11c.zip)|MAT(ECoG93, Event)|R03_0044_CM997M|AD-Awake| +|[`Ss20180608S5c.zip`](Ss20180608S5c.zip)|MAT(ECoG96, Event)|R03_0070_CM1002M|AF-Awake| +|[`Ss20180611S6c.zip`](Ss20180611S6c.zip)|MAT(ECoG96, Event)|R03_0070_CM1002M|AF-Awake| +|[`Ss20180613S5c.zip`](Ss20180613S5c.zip)|MAT(ECoG96, Event)|R03_0070_CM1002M|AF-Awake| +|[`Ss20180615S5c.zip`](Ss20180615S5c.zip)|MAT(ECoG96, Event)|R03_0070_CM1002M|AF-Awake| +|[`Ss20180620S4c.zip`](Ss20180620S4c.zip)|MAT(ECoG96, Event)|R03_0070_CM1002M|AF-Awake| +|[`Ss20180629S11c.zip`](Ss20180629S11c.zip)|MAT(ECoG96, Event)|R03_0070_CM1002M|AD-Awake| +|[`Ss20180702S10c.zip`](Ss20180702S10c.zip)|MAT(ECoG96, Event)|R03_0070_CM1002M|AD-Awake| +|[`Ss20180718S6c.zip`](Ss20180718S6c.zip)|MAT(ECoG96, Event)|R03_0070_CM1002M|AD-Awake| +|[`Ss20180719S8c.zip`](Ss20180719S8c.zip)|MAT(ECoG96, Event)|R03_0070_CM1002M|AD-Awake| +|[`Ss20180720S9c.zip`](Ss20180720S9c.zip)|MAT(ECoG96, Event)|R03_0070_CM1002M|AD-Awake| diff --git a/Rc20180611S5c.zip b/Rc20180611S5c.zip new file mode 120000 index 0000000..b8a2a25 --- /dev/null +++ b/Rc20180611S5c.zip @@ -0,0 +1 @@ +.git/annex/objects/QP/6F/MD5E-s70780556--9aa60c4320e56512b573658e91f824af.zip/MD5E-s70780556--9aa60c4320e56512b573658e91f824af.zip \ No newline at end of file diff --git a/Rc20180613S5c.zip b/Rc20180613S5c.zip new file mode 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+.git/annex/objects/6Z/XV/MD5E-s73531324--bd150e21006c72569d35a298d2923e4a.zip/MD5E-s73531324--bd150e21006c72569d35a298d2923e4a.zip \ No newline at end of file diff --git a/Ss20180720S9c.zip b/Ss20180720S9c.zip new file mode 120000 index 0000000..44887d0 --- /dev/null +++ b/Ss20180720S9c.zip @@ -0,0 +1 @@ +.git/annex/objects/xm/jG/MD5E-s73683300--9975243cf90367276eb852601b825297.zip/MD5E-s73683300--9975243cf90367276eb852601b825297.zip \ No newline at end of file From 9dd03f3229874d28a001e6ef183b5470a53e4218 Mon Sep 17 00:00:00 2001 From: Gogs Date: Fri, 18 Nov 2022 02:15:10 +0000 Subject: [PATCH 6/8] branch created From 2ccc321a45e494575f823c02f3283158fe370def Mon Sep 17 00:00:00 2001 From: brainminds Date: Fri, 18 Nov 2022 11:16:39 +0900 Subject: [PATCH 7/8] update --- 05d/087/MD5E-s77811945--6f5baa63c903efb21cc0809d7148f2a1.zip.log | 1 + 106/15f/MD5E-s76396940--0e093982f1787bcc8f7849e695ea29e6.zip.log | 1 + 13e/a68/MD5E-s75428253--21233d2b2dba842fd5fa280ec288150a.zip.log | 1 + 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a/f4a/445/MD5E-s69992733--f121f348bb1e888c043ebf6535ebda79.zip.log b/f4a/445/MD5E-s69992733--f121f348bb1e888c043ebf6535ebda79.zip.log index 483ef50..a085385 100644 --- a/f4a/445/MD5E-s69992733--f121f348bb1e888c043ebf6535ebda79.zip.log +++ b/f4a/445/MD5E-s69992733--f121f348bb1e888c043ebf6535ebda79.zip.log @@ -1 +1,2 @@ 1668737704.88212944s 1 091e5656-d888-4088-8035-cfaf1df7001b +1668737773.556811246s 1 d33a888e-fc63-404e-b751-568b167a53a7 diff --git a/fc4/073/MD5E-s70527782--87d72c773fee5ff96f0c40172986d530.zip.log b/fc4/073/MD5E-s70527782--87d72c773fee5ff96f0c40172986d530.zip.log index 188f611..ad131d8 100644 --- a/fc4/073/MD5E-s70527782--87d72c773fee5ff96f0c40172986d530.zip.log +++ b/fc4/073/MD5E-s70527782--87d72c773fee5ff96f0c40172986d530.zip.log @@ -1 +1,2 @@ 1668737705.450639754s 1 091e5656-d888-4088-8035-cfaf1df7001b +1668737780.628311797s 1 d33a888e-fc63-404e-b751-568b167a53a7 From 0d44b763e733e85f1096013d95a4cfc5a84c67c1 Mon Sep 17 00:00:00 2001 From: Gogs Date: Fri, 18 Nov 2022 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