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BMA-2017/dataset-metadata_ld.json

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{
"@context": "https:\/\/schema.org\/",
"@id": "#dataset-reference-atlas-data-1",
"@type": "Dataset",
"additionalType": "Atlas",
"name": "Brain\/MINDS 3D Marmoset Reference Brain Atlas 2017",
"version": 1.1,
"dateCreated": "2017-11-22",
"dateModified": "2020-04-22",
"datePublished": "2017-11-22",
"alternateName": [
"reference-atlas-data",
"BMA 2017 Ex Vivo (Brain Space 1)"
],
"description": "The dataset includes NIfTI files of MRI T2 ex-vivo data; reconstructed Nissl stained images of the same brain, registered to the shape of the MRI; brain region segmentation (with separate color lookup table); and gray, mid-cortical and white matter boundary segmentation. In addition, a 3D Slicer scene file is provided that can be used for testing the dataset within the freely downloadable 3D Slicer software ([https:\/\/www.slicer.org\/](https:\/\/www.slicer.org\/)). The scene file can be dragged directly into 3D Slicer and the atlas can be used immediately. Files can be downloaded individually or as one zip file.\r\n<\/br>The atlas can be viewed online via the Zooming Atlas Viewer (ZAV) by clicking [here](https:\/\/www.bminds.brain.riken.jp\/ZAViewer_Reference_Brain\/).",
"url": "https:\/\/dataportal.brainminds.jp\/atlas-package-download-main-page\/reference-atlas-data",
"sameAs": [
"https:\/\/dataportal.brainminds.jp\/reference-atlas-data"
],
"identifier": [
"https:\/\/doi.org\/10.24475\/bma.2799"
],
"sourceOrganization": {
"@type": "Organization",
"@id": "#org-riken-bsi-nijc"
},
"citation": "Woodward, Alexander; Hashikawa, Tsutomu; Maeda, Masahide; Kaneko, Takaaki; Hikishima, Keigo; Iriki, Atsushi; Okano, Hideyuki; Yamaguchi, Yoko (2017): The Brain\/MINDS 3D digital marmoset brain atlas. https:\/\/www.nature.com\/articles\/sdata20189",
"keywords": [
"digital atlas",
"marmoset",
"Callithrix jacchus",
"brain",
"reference atlas",
"3D",
"NIfTI",
"brain atlas",
"3D Slicer"
],
"license": {
"@type": "CreativeWork",
"name": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"url": "http:\/\/creativecommons.org\/licenses\/by\/4.0\/"
},
"creator": [
{
"@type": "Person",
"sameAs": "https:\/\/orcid.org\/0000-0003-3068-1401",
"@id": "#person-woodward-alexander",
"givenName": "Alexander",
"familyName": "Woodward",
"name": "Alexander Woodward",
"email": "alexander.woodward@riken.jp",
"memberOf": [
{
"@type": "Organization",
"@id": "#org-riken-bsi-nijc",
"name": "Neuroinformatics Japan Center",
"alternateName": [
"NIJC"
],
"url": "http:\/\/nijc.brain.riken.jp",
"parentOrganization": {
"@type": "Organization",
"@id": "#org-riken-bsi",
"name": "RIKEN Brain Science Institute",
"alternateName": [
"BSI"
],
"url": "http:\/\/bsi.riken.jp"
}
}
]
},
{
"@type": "Person",
"givenName": "Tsutomu",
"familyName": "Hashikawa",
"name": "Tsutomu Hashikawa",
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"@id": "#org-riken-bsi-nijc"
},
{
"@type": "Organization",
"@id": "#org-riken-symb_cogn_dev",
"name": "Laboratory for Symbolic Cognitive Development",
"url": "https:\/\/www.riken.jp\/en\/research\/labs\/bdr\/symbol_cogn_dev",
"parentOrganization": {
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"@id": "#org-riken-bsi"
}
}
]
},
{
"@type": "Person",
"givenName": "Masahide",
"familyName": "Maeda",
"name": "Masahide Maeda",
"memberOf": [
{
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"@id": "#org-riken-bsi-nijc"
}
]
},
{
"@type": "Person",
"givenName": "Takaaki",
"familyName": "Kaneko",
"name": "Takaaki Kaneko",
"memberOf": {
"@type": "Organization",
"name": "Laboratory for Marmoset Neural Architecture",
"url": "https:\/\/www.riken.jp\/en\/research\/labs\/cbs\/marmoset_neur_arch",
"@id": "#org-riken-marmoset_neur_arch",
"parentOrganization": {
"@type": "Organization",
"@id": "#org-riken-bsi"
}
}
},
{
"@type": "Person",
"sameAs": "https:\/\/orcid.org\/0000-0003-1133-1297",
"givenName": "Keigo",
"familyName": "Hikishima",
"name": "Keigo Hikishima",
"memberOf": {
"@type": "Organization",
"name": "Animal Resources Section, Okinawa Institute of Science and Technology Graduate University",
"url": "https:\/\/groups.oist.jp\/ars"
}
},
{
"@type": "Person",
"givenName": "Atsushi",
"familyName": "Iriki",
"name": "Atsushi Iriki",
"memberOf": {
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"@id": "#org-riken-symb_cogn_dev"
}
},
{
"@type": "Person",
"sameAs": "https:\/\/orcid.org\/0000-0001-7482-5935",
"givenName": "Hideyuki",
"familyName": "Okano",
"name": "Hideyuki Okano",
"memberOf": {
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"@id": "#org-riken-marmoset_neur_arch"
}
},
{
"@type": "Person",
"givenName": "Yoko",
"familyName": "Yamaguchi",
"name": "Yoko Yamaguchi",
"memberOf": {
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"@id": "#org-riken-bsi-nijc"
},
"email": "yokoy@brain.riken.jp"
},
{
"@type": "Project",
"@id": "#org-brainminds"
}
],
"maintainer": [
{
"@type": "Person",
"@id": "#person-woodward-alexander"
}
],
"distribution": [
{
"@type": "DataDownload",
"additionalType": "release",
"position": 1,
"version": 1.1,
"name": "BMA 2017 Ex Vivo v1.1.0",
"encodingFormat": [
"NIfTI-1"
],
"contentSize": "103.35 MB",
"contentUrl": "https:\/\/dataportal.brainminds.jp\/download\/4767",
"associatedMedia": [
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"@type": "DataDownload",
"additionalType": "file",
"position": 1,
"identifier": 4761,
"name": "bma-1-mri_unprocessed_exvivo_t2wi.nii.gz",
"version": 1.1,
"description": "Unprocessed MRI T2WI ex-vivo volume with skull.",
"encodingFormat": [
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"gzip"
],
"uploadDate": "2020-04-22",
"contentSize": "32 MB",
"contentUrl": "https:\/\/dataportal.brainminds.jp\/download\/4761"
},
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"position": 2,
"identifier": 4767,
"name": "bma-1-all.zip",
"version": 1.1,
"description": "Everything together as one download.",
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"contentUrl": "https:\/\/dataportal.brainminds.jp\/download\/2818",
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"position": 1,
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"name": "bma-1-mri.nii.gz",
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"description": "MRI T2 ex-vivo volume. Version 1.0.",
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},
{
"@type": "DataDownload",
"additionalType": "file",
"position": 2,
"identifier": 2812,
"name": "bma-1-nissl.nii.gz",
"version": 1,
"description": "Nissl volume registered to MRI. Version 1.0.",
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},
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"position": 3,
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"name": "bma-1-region_seg.nii.gz",
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},
{
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"position": 4,
"identifier": 2814,
"name": "bma-1-graywhite_seg.nii.gz",
"version": 1,
"description": "Gray and white matter boundary segmentation volume. Version 1.0.",
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},
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"name": "bma-1-mid_seg.nii.gz",
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},
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"name": "bma-1-clut.ctbl",
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],
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"name": "bma-1-slicerscene.mrml",
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],
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}
]
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],
"provider": {
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"@id": "#org-brainminds"
},
"funder": [
{
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"@id": "https:\/\/doi.org\/10.13039\/100009619",
"name": "Japan Agency for Medical Research and Development (AMED)",
"url": "https:\/\/www.amed.go.jp"
}
],
"sdDatePublished": "2021-05-10",
"sdLicense": "https:\/\/creativecommons.org\/publicdomain\/zero\/1.0\/",
"sdPublisher": {
"@type": "Organization",
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"name": "Connectome Analysis Unit",
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],
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"logo": "https:\/\/cau.riken.jp\/wp-content\/uploads\/2019\/06\/cau_logo-1.png",
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"name": "Integrative Computational Brain Science Collaboration Division",
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"name": "RIKEN Center for Brain Science",
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"CBS"
],
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"logo": "https:\/\/cbs.riken.jp\/common\/img\/og_image_en.png",
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]
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"name": "Brain\/MINDS \u2014 Brain Mapping by Integrated Neurotechnologies for Disease Studies",
"url": "https:\/\/brainminds.jp\/en\/",
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"brainminds",
"BMINDS"
],
"sameAs": [
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]
}
}
}
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