{ "@context": "https:\/\/schema.org\/", "@id": "#dataset-reference-atlas-data-1", "@type": "Dataset", "additionalType": "Atlas", "name": "Brain\/MINDS 3D Marmoset Reference Brain Atlas 2017", "version": 1.1, "dateCreated": "2017-11-22", "dateModified": "2020-04-22", "datePublished": "2017-11-22", "alternateName": [ "reference-atlas-data", "BMA 2017 Ex Vivo (Brain Space 1)" ], "description": "The dataset includes NIfTI files of MRI T2 ex-vivo data; reconstructed Nissl stained images of the same brain, registered to the shape of the MRI; brain region segmentation (with separate color lookup table); and gray, mid-cortical and white matter boundary segmentation. In addition, a 3D Slicer scene file is provided that can be used for testing the dataset within the freely downloadable 3D Slicer software ([https:\/\/www.slicer.org\/](https:\/\/www.slicer.org\/)). The scene file can be dragged directly into 3D Slicer and the atlas can be used immediately. Files can be downloaded individually or as one zip file.\r\n<\/br>The atlas can be viewed online via the Zooming Atlas Viewer (ZAV) by clicking [here](https:\/\/www.bminds.brain.riken.jp\/ZAViewer_Reference_Brain\/).", "url": "https:\/\/dataportal.brainminds.jp\/atlas-package-download-main-page\/reference-atlas-data", "sameAs": [ "https:\/\/dataportal.brainminds.jp\/reference-atlas-data" ], "identifier": [ "https:\/\/doi.org\/10.24475\/bma.2799" ], "sourceOrganization": { "@type": "Organization", "@id": "#org-riken-bsi-nijc" }, "citation": "Woodward, Alexander; Hashikawa, Tsutomu; Maeda, Masahide; Kaneko, Takaaki; Hikishima, Keigo; Iriki, Atsushi; Okano, Hideyuki; Yamaguchi, Yoko (2017): The Brain\/MINDS 3D digital marmoset brain atlas. https:\/\/www.nature.com\/articles\/sdata20189", "keywords": [ "digital atlas", "marmoset", "Callithrix jacchus", "brain", "reference atlas", "3D", "NIfTI", "brain atlas", "3D Slicer" ], "license": { "@type": "CreativeWork", "name": "Creative Commons Attribution 4.0 International (CC BY 4.0)", "url": "http:\/\/creativecommons.org\/licenses\/by\/4.0\/" }, "creator": [ { "@type": "Person", "sameAs": "https:\/\/orcid.org\/0000-0003-3068-1401", "@id": "#person-woodward-alexander", "givenName": "Alexander", "familyName": "Woodward", "name": "Alexander Woodward", "email": "alexander.woodward@riken.jp", "memberOf": [ { "@type": "Organization", "@id": "#org-riken-bsi-nijc", "name": "Neuroinformatics Japan Center", "alternateName": [ "NIJC" ], "url": "http:\/\/nijc.brain.riken.jp", "parentOrganization": { "@type": "Organization", "@id": "#org-riken-bsi", "name": "RIKEN Brain Science Institute", "alternateName": [ "BSI" ], "url": "http:\/\/bsi.riken.jp" } } ] }, { "@type": "Person", "givenName": "Tsutomu", "familyName": "Hashikawa", "name": "Tsutomu Hashikawa", "memberOf": [ { "@type": "Organization", "@id": "#org-riken-bsi-nijc" }, { "@type": "Organization", "@id": "#org-riken-symb_cogn_dev", "name": "Laboratory for Symbolic Cognitive 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